simPIC: flexible simulation of paired-insertion counts for single-cell ATAC sequencing data

Overview

This website hosts the code needed to reproduce results and figures from the pre-print manuscript “simPIC:flexible simulation of paired-insertion counts for single-cell ATAC sequencing data”.

Datasets used in this manuscript

All datasets used are publicly available on GEO and 10X Genomics website. All analysis and simulation is done on PIC matrices.

Tables to generate figures are provided in data/<Figure#>

Package availabilty

The R package is available on Bioconductor https://bioconductor.org/packages/release/bioc/html/simPIC.html