simPIC: flexible simulation of paired-insertion counts for single-cell ATAC-sequencing data

R package
genomics
single-cell
Author

Sagrika Chugh, Heejung Shim, Davis McCarthy

Doi

https://bioconductor.org/packages/release/bioc/html/simPIC.html

Citation (APA7)

Chugh S, McCarthy D, Shim H (2024). simPIC: simPIC: flexible simulation of paired-insertion counts for single-cell ATAC-sequencing data. R package version 1.0.0, https://github.com/sagrikachugh/simPIC.

Abstract

simPIC is a package for simulating single-cell ATAC-seq count data. It provides a user-friendly, well documented interface for data simulation. Functions are provided for parameter estimation, realistic scATAC-seq data simulation, and comparing real and simulated datasets.